Code
Here I provide code to accompany many of my publications. All are programmed using MATLAB. All are free to download and use; however, if any of the algorithms are used in a publication I request that you cite the relevant accompanying publication as listed below. I provide no guarantee that the code are free of errors. I hope you find them useful!
SourceForge EpiStruct Project Code
Description: MATLAB routines for epidemic modelling and inference in structured populations; Release 1.0 is available from the SourceForge EpiStruct website, and is based upon our work published in PLoS ONE in 2010.
We are currently developing new routines to add to this Project.
Publication(s): Ross, J.V., House, T. and Keeling, M.J. (2010) Calculation of disease dynamics in a population of households. PLoS ONE 5(3): e9666.
[Article | Articles Citing via Google Scholar | SourceForge EpiStruct Project Code]
Invasion of infectious diseases in finite, homogeneous populations: MATLAB code
Description: MATLAB routines for evaluating R0 and the probability mass function of secondary infections for SIS and SIR models of disease dynamics with exponential, 2-phase gamma, and constant infectious period distributions.
Publication: Ross, J.V. (2011) Invasion of infectious diseases in finite, homogeneous populations. Journal of Theoretical Biology 289, 83-89.
[Article | Articles Citing via Google Scholar | Zipped Code]
Optimal GPS tracking for estimating species movements: MATLAB code
Description: MATLAB routines for determining the optimal use of a programmable GPS transmitter when estimating species movements.
Publication: Pagendam, D.E. and Ross, J.V. (2011) Optimal GPS tracking for estimating species movements. In (Eds F. Chan and D. Marinova) Proceedings of MODSIM11 International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, December 2011.
[Zipped Code]